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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:15 
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I'd suggest that the extinction event didn't result in a huge new mutation event.
But that the different (sub)species already existed but in a relatively small population with no or little fossil record.
They would then appear on the record as their population increases post extinction event.
The mutations/evolutionary processes already having done their trick.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:22 
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RupertofOZ wrote:
Journeyman wrote:
One of the problems with the mutation theory for Evolution is there is a basic assumption that it is proven to happen - we get explanations such as
Quote:
Damage to DNA can be caused by mutations such as replication errors or incorporation of mismatched nucleotides (substitution errors – transitions and transversions). DNA can suffer single or double-strand breaks (left). DNA damage can result from unintentional and intentional environmental mutagens such as oxygen radicals, hydroxyl radicals, ionizing or ultraviolet radiation, toxins, alkylating agents, and chemotherapy agents, particularly anti-cancer drugs. Cells have evolved mechanisms for repair of DNA, and all organisms, prokaryotic and eukaryotic, utilize at least three enzymatic excision-repair mechanisms: base excision repair, mismatch repair, and nucleotide excision repair.

... which are supposed to tell us all about it. What they do NOT say is just how the mutation happens at all. As pointed out, cells have repair mechanisms and this would actually cause many possible changes to be 'fixed' back to the original set up.

Huh?.... the quote does say how mutations can occur... and possible causes...

No disputing that "cells have repair mechanisms"... and that "many possible changes to be 'fixed' back to the original set up".....

But this simple means... that if the cell is "repaired"... returned to original "set up".... then NO mutation has occurred... :lol:

No Rupert, it doesn't say how they occur - it offers possible causes for them but does not explain just how a given DNA can be altered without damaging it to the point it will not be useful for reproduction.

And the repair mechanism means, not only do we have tiny random changes that have to add up to a significant change in the genome (or Evolution does not work) we have a mechanism working to reduce any changes that might occur. And somatic changes (ones that are NOT to the reproductive cells) do not affect Evolution anyway.

So we have the tiny chance that a given cell will have its DNA altered, reduced even further by the ability of the cell to repair said DNA damage, and reduced further still by the tiny probability said cell will be a reproductive cell, and even if it is, the recombination/meiosis process offers yet another level of repair and all this drives a process where by far the largest possibility is destructive rather than benign or constructive.

So we have several orders of magnitude of increasingly unlikely random alterations somehow causing such massive changes that in 650 million years we have gone from single-celled Archaea and non-nucleus Prokaryotes through to all the life forms we've found, both extant and extinct.

That may sound a long time for things to happen, but it truly isn't if Evolution is as described.

When you look at it in detail, the Theory of Evolution would seem to require a level of belief only equalled by the level required for Creation.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:28 
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too much to read, but for DNA, its well established that non canonical base pairing can occur. both strands are replicated independantly to produce two new double helicies. recombintion repair mechanisms are meant to repair the mistakes, but that doesnt always happen. the mistake can become established on both strands during the next round of replication. If its not immediately lethal to the cell (ie, changes a codon thats important for protein) its replicated and becomes part of the population.

this is of course assuming human genetics. for bacteria, its even easier. i've made bacteria change their genomes in less than a hundred generations in a tube on the bench.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:35 
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@Rupert -
Quote:
The distinction you're making.... and need for pedanticism... is so obviously clear....
I merely respond to the master of pedantery... :D It took a deliberate act on your part to change the conversation to moth (you put quotes around it) so it was clearly worth querying.

@werdna - the fish would seem to be an example of Adaptation rather than Evolution. But you are closer to the possible real process than anyone else has come so far - except a brief implication in Yavimaya's post... :D

@Bodgy - ah, see now that is someone using their mind and thinking it through, Certainly that is a possibility, although the sheer number of new species that appear after an ELE make it difficult to understand how only the minor branches of a species fail to be represented in the record. It may seem that numbers may make it so, but Evolution as described does not work that way. Every population should have a range of the various less successful versions of the genome, so logically we should see at least a few of them in the record.


Last edited by Journeyman on May 22nd, '13, 16:39, edited 1 time in total.

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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:39 
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I thought non canonical base pairing caused prion formation (or is it deformation) and resulted in non-reproductive cells as well as deformed proteins that are often lethal?

I know of other pairings in RNA - I think there's a base called Uracine or Uracil or similar that replaces the Thymine and I have a recollection of a paper talking about A-A bonding for RNA.

For the bacteria, you need to be careful using such examples - you are talking of Intelligent Design ( :D) of a life form and it still took 100 generations. How long would the process take with purely random changes?

EDIT: S'been fun. Missus is demanding my presence so more later if people are interested.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 16:45 
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for the bacteria I forced it. I fed it an antibiotic that it cant live on in very small doses until it could live on it. thats not ID, thats evolution. At a generation ever hour, you can do the maths on how long it takes.

a prion has no DNA, its a self replicating protein.

the problem with DNA is that not all of it codes for proteins. especially in the human genome. most of it is "junk" (though its not even remotely junk). remember that cells turn over every day or so, and we have billions of cells, so theres a lot of DNA replication going on.

i'm not going to write an essay on it, thats what my job pays me for, not an internet forum about aquaponics.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 17:05 
werdna wrote:
Evolutionists will base their arguments on their belief of evolution.
Creationists will base their argument on their belief in a higher being.


Journeyman wrote:
When you look at it in detail, the Theory of Evolution would seem to require a level of belief only equalled by the level required for Creation.


Hey... I believe in both theories....

At some point in time... an alien race visited earth.... and manipulated the basic life forms.... forcing an evolutionary timeline....

Where's the dispute... :lol:


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 17:45 
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Journeyman wrote:
Yavimaya wrote:
The black and white thing, with shades of grey making things show up, maybe... im no expert, not somethin i have heard of before. However, most things have colour vision, maybe not all the colours we see, but as far as i know, the ones that have greyscale sight tend to have compound eyes, which dont see enough detail for what you said anyways.... but know knows, TBH, to think a person knows anything about what an animal sees if pretty laughable, we can make educated guesses, nothing more.

As far as the butterflies go, of course the reletives matter, they are basically the same butterfly, but with different colourings, once again, it comes down to naming convention.
But that aside, as hass been stated, it is all very incremental, there is no plan, butterflies with a simple round pattern start to be eaten less, that round pattern has colour variations, the ones that happen to accidently mimmick the colour of eyes do better than 1 single colour, so they survive better.

I dont think there is such thing as "perfect camo" when it comes to nature, those butterflies are no exception, any breaking of pattern and colour gives a camo effect, i did see a small "lizard" face in the 2nd picture you posted, but absolutely nothing in the first, the first looked like a dot with broken camo patterns, nothing more, But that is all that is needed.
the dots were never meant to look like eyes, they simply went that way because the more detail in that dot, the less it looks like a dot, so the more confusing it is to predators, therefore they are less likely to eat that butterfly.

The grey scale thing is incidental - just something I ran across many years back - pretty sure it was before the internet.

The idea it is incremental is not proven - as mentioned above, it is dogma from the Theory of Evolution and the fossil record disagrees with it anyway. There is no difference using that argument as a counter to my question than there is in saying 'that's how God did it' every time someone questions Creation. I am questioning the very idea that incremental changes could have worked in the case of the butterfly, so to counter with saying 'because it is incremental' does not address the question at all.

Situation: We have a butterfly so large it needs camouflage to survive the eagle eyes of its predator. ANY change to that camouflage exposes it. Generations of slowly evolving black dots does NOT help it survive better and therefore, by the rules of the Theory of Evolution, the mutation should die out.

And yet we have Owl Butterflys with perfect reproductions of a predator's eye. The eye works. It has been observed in the wild to work. If the black blotch conveyed any survival benefit we would still see some of them around - that is how Evolution is touted to work. A survival benefit does not automatically remove all those with less of it or none, it just biases the odds.

We appear to be seeing a species that has gone from one level of benefit to another with none of the intervening stages being left behind.

The question is, how could this have come about?

Yavimaya wrote:
No it is not, a bacteria which survives a certain substance will divide into other bacteria that are more likely to survive that susbstance, not other substances.
It is (mostly) directly related to the danger that needs to be survived.

Unfortunately, that is a level beyond what we are talking about. How did that bacterium come to survive when the others didn't? That is where the mutation comes in, not in the act of survival itself.

Unless you are proposing the bacterium somehow changes itself after it survives?

While it is perfectly possible the random changes to the bacterium genome allow it to handle adverse conditions better, it does not answer the question of how a change to a genome can be made without destroying the connection from one DNA 'chain' across to the other.

And there is another issue which I will address in the next post.



Correct and this benefit means they survive the test of time, the ones without dont, they can also be bred out, like was done to the neanderthal, outbreeding along with lesser qualities means that time will catch you in the end, you dont know that the last of the simple black dot butterflies didnt die out 700 years ago after surviving and evolving for 550,000 years. We simply dont know.

I understand what you are saying, i dont know how to explain exactly what i mean to you, I cannot go through every step it would/might take to go from a plain butterfly (like cabbage moth) right through to a nice looking "eye". To understand what i mean you have to understand how bacteria evolve and how they "out reproduce" most toxic substances.

I cannot explain how genomes change, but they do.... So you cannot see how an A that needs a T can have the T change to a G, but how about the A also changes to match what the G needs, automatically, simply because in mostly lifeforms these mutations are a match/mismatch between two sets of genomes.
It is not like most things are reproducing by themselves, thereby changing thier own genomes.
Bacteria, i dont know what evolves them, but they are still not mutating thier own genomes, bacteria are clones of other bacteria.
So lets say one billion bacteria get hit by a substance, 100 survive because they were on the outer zone and only got hit a little, IF (i dont know this part obviously) the immune part of said bacteria are able to absorb/repel the substance effectively, then like humans and virus, i imagine that will be written forever into them, when they spilt all the new bacteria are encoded with the resistance. Obviously this does not happen within 1 generation, resistance will only go up so much each generation.

Im sorry i cant explain my understanding in a more scientific way. This probably has nothing to do with what you wanted to discuss, but as i said before.....
you are asking people here to discuss very, very technical things on a low intelligence needed sort of forum that a scientist probably couldnt tell you about.


Last edited by Yavimaya on May 22nd, '13, 17:59, edited 1 time in total.

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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 17:52 
Yavimaya wrote:
i dont know how to explain exactly what i mean to you, I cannot go through every step it would/might take to go from a plain butterfly (like cabbage moth) right through to a nice looking "eye".

Ahhh... for sentients sake Yavimaya... don't go mixing your butterflies and moths.... :lol:


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 17:54 
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Bodgy wrote:
I'd suggest that the extinction event didn't result in a huge new mutation event.
But that the different (sub)species already existed but in a relatively small population with no or little fossil record.
They would then appear on the record as their population increases post extinction event.
The mutations/evolutionary processes already having done their trick.


However, there are links between dinosaurs and birds.
Are you saying birds in thier current form or something close to it lived during the time of the dinosaur?
Extinction events do not and cannot evolve large animals, they can only setup the environment for further changes to happen and change the direction of changes.
im sure however that depending on the type of event, they can directly force bacteria to evolve.


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 17:59 
Yavimaya wrote:
However, there are links between dinosaurs and birds.
Are you saying birds in thier current form or something close to it lived during the time of the dinosaur?

Yep... they were called raptors... :wink:

Or more correctly.. for the pedantic police.... Velociraptors.... :D


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 18:00 
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raptors couldnt fly :laughing3:
Raptors were also alot more ferocious than any bird alive today.
Those were the links i was alluding to rupert. :)


Last edited by Yavimaya on May 22nd, '13, 18:03, edited 1 time in total.

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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 18:03 
Yavimaya wrote:
raptors couldnt fly :laughing3:

:laughing3:

Tell that to the pterodactyls... pterodactylus... and pterosaurs.... :D


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 18:05 
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You say that, but you cant prove those branches didnt die out.
Also, there is the fact that those arent raptors, lol. :)


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 Post subject: Re: The Evolution Puzzle
PostPosted: May 22nd, '13, 18:11 
:laughing3:

Probably true.... they were more akin to flying lizards...

But the velociraptors... were bi-pedal, and feather covered... and there is evidence that the ancestors of dromaeosaurids could fly... :wink:


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