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Overall, not a good scenario. I will assume that the water is otherwise testing ok for ammonia, ph and nitrites. Water quality is a common culprit. One thing to do where you can't go wrong is to aerate the water to the maximum of your ability. You cannot put too much air into the system. Even if you do a total water change and turf all the fish, parasites will in all likelihood still remain in the system.
Salt can only do so much, and in higher concentrations, as you know, will kill some/all plants, may not save your fish, and may actually cause the death of the fish. The course of action really needs to be dependant upon what is the underlying problem with the fish, as some treatment will not help. Salting is cheap and easy, and is generally considered a good propholactic treatment for salt tolerant species (some catfish for example can't tolerate salt), and does help reduce stress in fish in low levels. Salt levels up to 0.6% is generally safe for many fish, but once again, it depends on what specifically is wrong with them, and this level will kill many plants. Is there any more description you can provide on the dead and suffering fish? Some types of parasites (like trichodina) will clear up with a salt treatment, and about 7 of the 9 most common parasites will clear up with salt. The ones that do respond to salt, will generally respond to a 0.3% dosage, so going higher could be counter-productive. Flukes will only marginally respond to salt however (about 40% of the time). Dosage at the higher levels than 0.3% probably won't really help you much. The good thing about salt at the lower level is that it won't harm your bio-filter.
WARNING- this is not a recommendation. In years past, I have had excellent results using potassium permangenate(PP) (where salt failed) in dosages up to 4 ppm (only 2ppm for young and scaleless fish) in treating a variety of fish disorders, like flukes, fungus, and even with antibiotic resistant strains of aeromonas hydrophila. It does however require extremely accurate pre-analysis of the biological load on the water, and it will kill the bio-filter if it is circulated through it before it has become inert. You will need to isolate the growbed, assuming that is your primary bio-filter. It will only need to isolated for 24 hours however. It is not for arbitrary use, and if not used correctly, will kill everything except the plants. If used correctly however, it can be an extremely effective and cheap method of last resort only. It is not for the timid or mathematically inept, and needs to be done exactly correctly. You would need to know the exact water volume and determine the biological load for example. I can impart the detailed procedure to you if you require by sending me a pm if you are desperate and can obtain a small amount of PP.
Good luck
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